rs47877675 SNP Detail

Summary

• ID
  rs47877675
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20950401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCACGCC TTATCTAAGC
  CACTCCAGCC TCTGGCTAAC TGGCTTCTCA CTTATCCTCT TTCCTTCCTG TAGTTCTGAG
  AAGGGCAAAG ATCAAAACGT GGAGGACCGA GGACACAAAG TAGATATGGA GACAAAGAAA
  AGCGAGCCGG TGGTCCGCAA AGTCACCCTG ATAGAGGTAA GAGAGAATCA GCAGAGACTT
  W
  TTCCATCACC AAGAAAAGAT GTCAGACATC CTGGTCAACA ATGGCAGATG CCAGAGAGCA
  CCTCTGGTGT AAGCACTGGC AAGGGGTCGT TGGGAATTGC AGCCAAGAAG CTATTAGTGG
  CCTGCAGGAA GTGTTGGTAG ACAGGACTAG TAGTACTATT AAGTCAGACT GTCATCAGCC
  TGAAGGAAAA AGACCTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52171237	NES15228690	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47877675					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52171237	NES15228690	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20950401 () rs orientation: forward

Symbol	Name	Function Class
Ahi1	Abelson helper integration site 1	within coordinates
Rr218805	regulatory region 218805	400 bp proximal
Rr222235	regulatory region 222235	1375 bp distal
Rr226913	regulatory region 226913	1601 bp proximal