rs47877845 SNP Detail

Summary

• ID
  rs47877845
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156058281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC TAACTTCAGA AACATGCAGT
  S
  ATGCAGGTAA GGTGGGTTAA GAATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145791151	ENSMUSSNP5017173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47877845					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156058281 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	1357 bp distal
Rr421147	regulatory region 421147	821 bp distal
Rr421148	regulatory region 421148	1071 bp distal
Rr421149	regulatory region 421149	951 bp distal
Rr421150	regulatory region 421150	within coordinates