rs47877897 SNP Detail

Summary

• ID
  rs47877897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTTTT GCCTGCTAGA
  TTTCTTCTCA CCAACCCCTC TTCACCCGTC GGAGCCAGAA GGATGTGTGG ATAGACGGCT
  TAAGAACAGT AAGTAACGTG AGCTGTTTTC TTCCATCCCT GTTCAGGATT CGTTGCAACA
  GAGCTGAGGT TTGCTTGTTG GAGGCGTTTG GGATAAGCAC GCACTCCTTG AAGGGAAGGG
  R
  GCTTCCTGCC ACGTTTGCGT TGTTTGATGT GAATTCTGGT TGACTTAGCT GGTTTTTACT
  GGTGACAATC AACGTTCTCA GTGCTGCTTC CTCTTGTGAT CTGTGATGCT GAGCTTTGTG
  TGGCATGGAA CATACGCGTG CTAGTGTAGT AGTTTAAGAT ACCCTGTGAG TATCACAGGC
  ACTAGCTCTG GGGTTGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss134764201	ENSMUSSNP6802612	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47877897					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251491 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	404 bp distal
Rr575109	regulatory region 575109	within coordinates
Rr575110	regulatory region 575110	955 bp proximal
Tssr28802	transcription start site region 28802	586 bp downstream
Tssr28803	transcription start site region 28803	552 bp downstream
Tssr28804	transcription start site region 28804	409 bp downstream