rs47878416 SNP Detail

Summary

• ID
  rs47878416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTGAGA AGGGCTGTCT
  AAATACATGG CCTCCTTGAG GAGTGCTGGA ACACACCCAC CTTCCTGCAC TGAACTAGAG
  ATTCCTTTAA ACCCTTCTGA GCACTGGGAT TGCTGGCTGG CTCTCAATTC TGGAAGGTCC
  TCTTCTCTGC TAGCTGGTTA GTTGACTGGT TGCTTTTTAA GCCAGGGTTT CTATGTAGCC
  Y
  TGCCTGACCT GGAACTCACT GTAAACCAGG CTAGCCTGGA ACTCAGACCC ACCTGCCTCT
  GCCTCCAGGG TGCTGGGATT GGAGCAAGCC ACCACCTGTG TCTCAGCTTC CTGTTTTGCA
  TGCACCCCTT AAAGTGAGCT TGTACCGTTT TCCCAGACCA GAAGGAGGCA AACCTTCTCA
  GGTACATAGT TCTTTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146452649	ENSMUSSNP6402999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47878416					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1654 bp distal
Rr363443	regulatory region 363443	440 bp proximal
Rr370520	regulatory region 370520	726 bp upstream
Trim8	tripartite motif-containing 8	866 bp downstream
Tssr156777	transcription start site region 156777	1981 bp downstream
Tssr156778	transcription start site region 156778	1559 bp downstream
Tssr156779	transcription start site region 156779	1465 bp downstream
Tssr156780	transcription start site region 156780	1142 bp downstream
Tssr156781	transcription start site region 156781	1118 bp downstream
Tssr156782	transcription start site region 156782	1012 bp downstream