rs47878553 SNP Detail

Summary

• ID
  rs47878553
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100819312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCATGT CCCAACCCCA
  CAAAAACCCT ACTTCTGTCC CCACTGATTG CCAGGGGCAC TCCTTTCTAT CTTCCCTGTG
  ACACTTTCAT TCCTTACAGT TATTCTGTGA AGAAAGGTGT AGAGGTAGTG AGAAACGCCA
  AACAGGCTGT AGACAGACTT GTTTATTATA AAATGGAAAG ATTCTCTGGG AGAGGAAATA
  M
  AATGGTCAGA TTCTGAATGG GATGGGCAGG GCAGGGCTAA AGGTCTGTGT AGACTGAGCT
  TACAATTCTC TAACGATAGA TTTCCCTTAG GACAACCCGC AACTGCAGTG AAGAGGGAAA
  CACACTGCCA ACCTGGTGGA AAGAGCGCCA CCTGCCAAAA CTTCCTGAAA TGACACCGGT
  TGACTGACCA GTGATGTAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148928033	ENSMUSSNP6610452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47878553					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100819312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			1 bp proximal
Rr615538	regulatory region 615538			142 bp proximal
Rr615539	regulatory region 615539			1008 bp proximal
Rr615540	regulatory region 615540			1977 bp proximal