rs47879287 SNP Detail

Summary

• ID
  rs47879287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54868342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCAGATA AGAGAACCCC
  GGGTACCTCA CTACCACACT AGGAACTAGC ATACTTTCGG CCTTTACACT GGGAGGTTAA
  AGGTTGTGGG GGCAGCCACG GCTACCCTGT AATGGCCAGT CGCTTTATCC TGCTTTGGGA
  TCAGCTAGCC TAGAATCCAA CGTTCTTTCA GCTGCTCTGT GGCATATTTT TATCCCTGTC
  R
  CAGGGCTTTC TGGTTCTAGG ATGTTGCCTG ATGCATCCCA ATTGTAGCCT TAGCTGCCCT
  TATCCTAACA GGCACCCTTC ACCAATAGCA GTCATTGAAT TCTCTCATCT GGGCAGAACT
  AGATGGTTCT CACAGGGCAC CCCCACCTTT GCAACCTCTG ACAGGAACAA TTAAGAGAGC
  TCTGGCTTAC ATTTCTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61403634	NES16782428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47879287					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403634	NES16782428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54868342 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	151 bp distal
Rr209620	regulatory region 209620	within coordinates