rs47881957 SNP Detail

Summary

• ID
  rs47881957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTATGCT GCCTCATATT
  ATCTTTGATT ACATATACAG AAAGTGAGGA GATTCAAAAG GTGCTCCAGG CAAACGGAGA
  CCAGCAGGGA CCAGAGACTA CCTGTACTTT AGTCCTAAAC TTAGTAAACA AAGTGGGCTG
  CAAAGACTGA TTACCAGTCA AAGGCCATCA TCGAGGCAGA GACAAATGGA TCTCCGAGTG
  Y
  GAGATCAGAC TGGACTCCAC AGCTCAGACC AGCCAGGGCT ACACAGTGAC ACCCTGTCTC
  AAAGAAAGGC CTTTACAGAA TGAGAAAGCA TTTTCATGTA CAGCTTTAAA TAACTCATGA
  ATTTAATATC GGACCACATA CCACACGAAA GGGTCTGAAG AGGCCACTAA GGCATGCCGC
  TCAAGTCTAA TCTGACCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148941441	ENSMUSSNP6246400	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319691756	CHEV_1_37530815	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47881957					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513051 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	673 bp upstream
Rr409534	regulatory region 409534	1784 bp distal
Rr409535	regulatory region 409535	267 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1485 bp downstream