rs47882767 SNP Detail

Summary

• ID
  rs47882767
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG GGGGAGACTG TTGAATGACT
  K
  CCCTCTGCCA AACCACACTA GAAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135527825	ENSMUSSNP49736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320845390	CHEV_3_98661321	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47882767					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764714 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1768 bp distal
Rr581745	regulatory region 581745	1533 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	516 bp downstream
Tssr980	transcription start site region 980	903 bp downstream
Tssr981	transcription start site region 981	929 bp downstream
Tssr34711	transcription start site region 34711	1317 bp upstream
Tssr34712	transcription start site region 34712	522 bp downstream
Tssr34713	transcription start site region 34713	569 bp downstream
Tssr34714	transcription start site region 34714	608 bp downstream
Tssr34715	transcription start site region 34715	702 bp downstream
Tssr34716	transcription start site region 34716	725 bp downstream
Tssr34717	transcription start site region 34717	785 bp downstream
Tssr34718	transcription start site region 34718	845 bp downstream
Tssr34719	transcription start site region 34719	891 bp downstream
Tssr34720	transcription start site region 34720	912 bp downstream