rs47883115 SNP Detail

Summary

• ID
  rs47883115
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31886046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGGAGC CAAGAGCAGT
  TTGACCTGTA AGTTTGTAAC AGGTTGACAG GAAGGTAGAG AGAGGAGAGA CTGTTGCCTA
  TACCCAGAGA GCAGGTCAGA TGTTGTCAAG GTTGACCTGT AAGATGGAGG GAAGTCGTCG
  TAGAAATTAC TTAAACCCGA CCCAGTGTTT CTAACCCTTC CTAAGACCAT TCAGTTCCTG
  A
  ATAAAAGACA CACACAACCT TTATATTTAC AACAAGCCTT AAACAGCACA AGGGCCGGTC
  AGACTACCCT CTTTGCTATT AAAATCTACT TTCCTATCGA TAATCTTGAG TTATTATTTA
  CTATGTTTCA TCTGGGCTGC TCTTAACTCC AGTTGGCCAG CCTTTGGGGC AACATTTTTT
  TATGTCTCAA CTAGCCCATG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137570391	ENSMUSSNP6322136	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47883115					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31886046 () rs orientation: forward

Symbol	Name	Function Class
Cog5	component of oligomeric golgi complex 5	within coordinates
Rr387038	regulatory region 387038	within coordinates