rs47884040 SNP Detail

Summary

• ID
  rs47884040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGGCAC CATTGCTGGG
  CAACATAGCA TAGTTTCACT CAAATTACTA ATGAAACATA CTAATTTACC AATTCTATTT
  GCTATATACA CATCAGAACT TTTGAAAAAT ATTTTTATTT CTGAATTTTC GACACATATT
  AAAATTATGA TTAATGAGTG TATTACTAAA CGACATTAAT TTGCTTAACT ATAATTCTGA
  M
  TCCTTTGGAT TTCTGTGCTT TTTAATTATG CTTTTCTCCC CATATAGCTC AGAAAGAGAA
  GAAGGTTCAT ATTTTAAGCC AGTTAAGCCC AGAATTCACC TGATAAAGAA TGAAGGACAC
  AAAGAAACGT GTCCCGGAAA CTGTGACACA GTTACAACAC AGTGTGACTG GAACATACAA
  CAGCTCATCA TGTAGCTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135865029	ENSMUSSNP5765435	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320954665	CHEV_3_127199340	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47884040					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290071 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1910 bp proximal