rs47884056 SNP Detail

Summary

• ID
  rs47884056
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32746785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGCG CGCGCGCGCA
  CGCACGCTCG AGAGTGTGTG TGAAGTCCAT GGCATGTGTG GAGGTTAGAA GACAACTCTT
  GGATAGGAAT TGGTTCTCTC TTCATACTTT GTGTGGTCTG GCTACTGAAT TCAGGTCATT
  GAACATGGGT GCTAGCCCTC TAATTACAAG CATTCTAGCA GGCTAGGACT TTGTTTTTAC
  W
  CCCTGGATAA TTACGTGGTG GTTTCTTAGG GACGACCTGG CCCAGCTGCC CTTCCTGACC
  ATGTGCATCA AGGAGAGTCT GCGGCTGCAC CCCCCAGTTA CGGTCATTTC CCGTTGCTGC
  ACCCAAGACG TTGTGCTTCC AGATGGCCGG GTCATCCCTA AAGGTGTGGA CTGTATGGGG
  AGGTGGCTCC TGATGGTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62677640	NES17315074	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	T	A	A		A
ss325362239	CHEV_17_32664756	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47884056					SNP	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62677640	NES17315074	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32746785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8980	CpG island 8980	788 bp proximal
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr405183	regulatory region 405183	962 bp upstream
Rr525770	regulatory region 525770	1147 bp proximal