rs47885501 SNP Detail

Summary

• ID
  rs47885501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165466836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGTGT GGGCTTTAAG
  ACCCTCATCC TAGCTGCCTG GAAGCCAGTA TTCTGCTAGC AGCCTTCAGA TGAAGATGTA
  GAACTCTCAA GTTCTGCCTG CACCATGCCT TCCTGGATGC TGCCATGTTC CAGCCTTGAT
  GATAATGGAC TGAACCTCTG AAGCTGTAAG CTAGCTCCTA TTAAATGTGG TCCTTTATAA
  R
  ACTTACATTG GTCATGGTGT CTGTTCACAG CAGTAAAACC CTAAGACATG CAGCAAGCGC
  TTGACCCAGT GAGCCATCTT CCCCAGCCCT GAAACTGCTC AGCAATACAA GACCAGTGAC
  AGCAGCTGCC CCTGCTGGGT CCTGCACCCT ATAGGAGCTT TTACATCTGT TTTCTGTAGA
  GAGTCCCAGG TTCGTGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148241836	ENSMUSSNP1354553	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320608487	CHEV_2_165450416	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47885501					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165466836 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	1969 bp proximal