rs47886580 SNP Detail

Summary

• ID
  rs47886580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30736141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAGGTG ATAGGCAGAA
  AAAATGGTCA GAAGACAGTG GAAGGCAGGA GGAGCATCAG GGGCTGACCC AGGGATGTGG
  ATATAATAAC AGGGCTACAT CTGGGGTGCA GAGCACAGGC ACCTCCCACC CACACTATGG
  CAACAAGCAC CTGCCTGCAC CCCCCGCCCC CCAAGGCTGG ACCAGCTGCT CAGCCCAGGC
  R
  GGTCCCTCTT TTGGACCTCC GCTAACAACC CGAGAGCAGG GGACAGGATT ACACCGACTT
  TGTCCCTCCA GCCTAGAGAT ACTTATTTAA AATATCCTGA ACATCCTCTC TACTTTTGGA
  CCAAAAAATA GCGGGGCATT CTCTTCTTAA TTCTAATTTA ATTTAAAATG TTGGACACAG
  GGTCTGCCAT GTACCCCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989535	NES16136142	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47886580					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989535	NES16136142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30736141 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	127 bp upstream
Gm71772	predicted gene, 71772	273 bp upstream
Tssr2191	transcription start site region 2191	1231 bp upstream
Tssr65830	transcription start site region 65830	1448 bp downstream
Tssr65831	transcription start site region 65831	272 bp upstream
Tssr65832	transcription start site region 65832	692 bp upstream
Tssr65833	transcription start site region 65833	1089 bp upstream
Tssr65834	transcription start site region 65834	1143 bp upstream
Tssr71891	transcription start site region 71891	217 bp upstream
Tssr71892	transcription start site region 71892	302 bp downstream
Tssr71893	transcription start site region 71893	1144 bp downstream
Tssr71894	transcription start site region 71894	1165 bp downstream
Tssr71895	transcription start site region 71895	1178 bp downstream
Tssr71896	transcription start site region 71896	1208 bp downstream