rs47887375 SNP Detail

Summary

• ID
  rs47887375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCCAACT GTAGCCAAAA CTATTCATAA CTGATAGCTG
  CTGGGAGAGG GAAAATCAGT TTTCTTCAGT GGAGTGACTG GGTATATCAA CCACTCTCCA
  R
  GGCAGGACTC CATGCTTAGT TTGTTTTTTA CTTTAGAAAG AGGAAAAATA GAGCATGAGT
  TGGGTGTGTA GGGAGTTGGG GGAGGATATG GAAGGTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585262	CHEV_2_157104297	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47887375					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	260 bp proximal
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	537 bp upstream
Rr397441	regulatory region 397441	187 bp upstream
Rr568459	regulatory region 568459	8 bp proximal
Rr568460	regulatory region 568460	978 bp proximal
Tssr21228	transcription start site region 21228	437 bp upstream
Tssr21229	transcription start site region 21229	465 bp upstream
Tssr21230	transcription start site region 21230	504 bp upstream
Tssr21231	transcription start site region 21231	717 bp upstream
Tssr27165	transcription start site region 27165	951 bp downstream
Tssr27166	transcription start site region 27166	958 bp downstream
Tssr27167	transcription start site region 27167	995 bp downstream