rs47888180 SNP Detail

Summary

• ID
  rs47888180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAGTCCACA AGGAGGAAGT GCAAACTGAA ATGCAAATTA
  CAAAAGCACG TGACAAGGGT TAGCTAGCAG ATTCCTAGCA GGGTCTTAGT GCCTCACCCA
  Y
  CAGAGCCGCA ACAAGATGCA GTCCTGGAGC CTGGAAGTCA CTTCCTGGGG TCTCTAACCT
  GAGACCTGCT AGGCAGATGC GTAGCAGCAA ACACACTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147504708	ENSMUSSNP6270970	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323449359	CHEV_10_104960095	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47888180					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358900 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	1001 bp downstream
Rr438484	regulatory region 438484	251 bp distal
Rr438485	regulatory region 438485	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1244 bp upstream
Tssr99170	transcription start site region 99170	1022 bp upstream