rs47888276 SNP Detail

Summary

• ID
  rs47888276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137590989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT GGTCTGCAGA GTGAGTTCCA
  R
  GACAGCCAGG CCTATACAGA GAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147622965	ENSMUSSNP2617630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321368362	CHEV_4_137419593	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47888276					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137590989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	824 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	1431 bp distal
Rr602749	regulatory region 602749	264 bp distal
Rr602750	regulatory region 602750	1042 bp proximal
Tssr39783	transcription start site region 39783	1429 bp downstream
Tssr39784	transcription start site region 39784	1410 bp downstream
Tssr39785	transcription start site region 39785	1357 bp downstream
Tssr44151	transcription start site region 44151	1569 bp upstream