rs47888553 SNP Detail

Summary

• ID
  rs47888553
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30906336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG AAAGGCTTAA TGAAGACGGG
  C
  AAAAAATAAT GAGGTGAAAT GAGGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148703249	ENSMUSSNP556763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322140288	CHEV_7_31991930	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47888553					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30906336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1284 bp proximal
Gm37292	predicted gene, 37292	1446 bp upstream
Gm73020	predicted gene, 73020	1403 bp upstream
Rr645057	regulatory region 645057	1062 bp proximal
Rr645058	regulatory region 645058	1442 bp proximal
Rr645059	regulatory region 645059	1596 bp proximal
Tssr65855	transcription start site region 65855	921 bp upstream
Tssr65856	transcription start site region 65856	1415 bp upstream
Tssr65857	transcription start site region 65857	1459 bp upstream