rs47890000 SNP Detail

Summary

• ID
  rs47890000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100006198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGTTAAG CCCTTTACAA GTTGCAAATA TTAGAACTCT
  TGGGTTCCAG CCACAGAGAA GCTGCGTAGA AAAGATTTAA AATAAATAAT AAGCTTTCAA
  M
  TAGAAACAAA AGGCCAAATT ACTGTAAGAA ATCATTTGGA AATGACTTGA GCGGATTTGT
  AAAACTCAAG TGAGCATTAT TGAAGTGGAA GGTGAGAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145079724	ENSMUSSNP2691571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324505376	CHEV_13_100639645	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47890000					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100006198 () rs orientation: forward

Symbol	Name	Function Class
Rr269933	regulatory region 269933	798 bp distal