rs47890165 SNP Detail

Summary

• ID
  rs47890165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT CACCTTACCC ATCCTGATCG
  M
  TGGGACAATG ACACCCCTTT TTTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708975	ENSMUSSNP4726219	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss325406546	CHEV_17_47866529	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47890165					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040505 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1129 bp proximal
Tssr5147	transcription start site region 5147	829 bp downstream
Tssr5148	transcription start site region 5148	267 bp upstream
Tssr5149	transcription start site region 5149	1903 bp upstream
Tssr145004	transcription start site region 145004	838 bp downstream
Tssr145005	transcription start site region 145005	817 bp downstream
Tssr145006	transcription start site region 145006	788 bp downstream
Tssr145007	transcription start site region 145007	756 bp downstream
Tssr145008	transcription start site region 145008	735 bp downstream
Tssr145009	transcription start site region 145009	707 bp downstream
Tssr145010	transcription start site region 145010	325 bp downstream
Tssr145011	transcription start site region 145011	306 bp downstream
Tssr145012	transcription start site region 145012	289 bp downstream
Tssr145013	transcription start site region 145013	237 bp downstream
Tssr145014	transcription start site region 145014	500 bp upstream
Tssr145015	transcription start site region 145015	562 bp upstream
Tssr145016	transcription start site region 145016	573 bp upstream
Tssr145017	transcription start site region 145017	1018 bp upstream
Tssr145018	transcription start site region 145018	1030 bp upstream
Tssr145019	transcription start site region 145019	1061 bp upstream
Tssr145020	transcription start site region 145020	1082 bp upstream
Tssr145021	transcription start site region 145021	1108 bp upstream
Tssr145022	transcription start site region 145022	1140 bp upstream
Tssr145023	transcription start site region 145023	1167 bp upstream
Tssr145024	transcription start site region 145024	1278 bp upstream
Tssr145025	transcription start site region 145025	1622 bp upstream
Tssr145026	transcription start site region 145026	1878 bp upstream
Tssr148459	transcription start site region 148459	779 bp upstream
Tssr148460	transcription start site region 148460	727 bp upstream
Tssr148461	transcription start site region 148461	715 bp upstream
Tssr148462	transcription start site region 148462	672 bp upstream
Tssr148463	transcription start site region 148463	299 bp upstream
Tssr148464	transcription start site region 148464	214 bp upstream
Tssr148465	transcription start site region 148465	541 bp downstream
Tssr148466	transcription start site region 148466	554 bp downstream
Tssr148467	transcription start site region 148467	1049 bp downstream
Tssr148468	transcription start site region 148468	1080 bp downstream
Tssr148469	transcription start site region 148469	1170 bp downstream