rs47890620 SNP Detail

Summary

• ID
  rs47890620
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21633546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTAGTT TGTTTTGCAT
  TATGTATTAT TTACTTTTTT ATTACTGCCT GTGACACATC ACAATATGAA TGTGCAGGTC
  ACAGGGACGA GTTCTCTCCT CTCATGTGGG TCCTCGGATT TGAACTCACA TCAGGTCAGT
  CCTGGCTGCA TGCACTAAGC CAACACACTA GCCCTGGTTT GTTCTGCAGG GAGCTAGGCA
  S
  GGACAGAATC TGAGTCCCTT TTAGAAAATC CCTAAGCCTT TGATTCATCA AAACTTCTCT
  ATCCATGGCA GACAGCCTTC TGGTTTAGCC ATCCAGTGTC AAGAGGGGAA AAAGGCCACA
  TGTGGTTGGT TTTGCTTCGA GGGAAGAGAT GCCCTTCTGT GTGTTCAACT CCTTGTAACA
  GGATAAAGCG GTACCAGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61360193	NES16736573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs47890620					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61360193	NES16736573	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21633546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21450	CpG island 21450	889 bp proximal
Gm26511	predicted gene, 26511	within coordinates
Ldlr	low density lipoprotein receptor	1326 bp upstream
Rr206061	regulatory region 206061	454 bp proximal
Rr401274	regulatory region 401274	1125 bp upstream
Rr401275	regulatory region 401275	1943 bp upstream
Tssr84044	transcription start site region 84044	1354 bp upstream
Tssr84045	transcription start site region 84045	1374 bp upstream