rs47890758 SNP Detail

Summary

• ID
  rs47890758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171121310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT CCTCGCTACA CCTTACTCCT
  Y
  CCTCCCCATG TTCTCAAAAT ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146159390	ENSMUSSNP1373301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320117851	CHEV_1_173223868	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47890758					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171121310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1022	CpG island 1022	748 bp proximal
Rr28967	regulatory region 28967	within coordinates
Rr372447	regulatory region 372447	105 bp upstream
Tssr15031	transcription start site region 15031	1015 bp downstream
Tssr15032	transcription start site region 15032	1087 bp downstream
Tssr15033	transcription start site region 15033	1200 bp downstream
Ufc1	ubiquitin-fold modifier conjugating enzyme 1	within coordinates