rs47891025 SNP Detail

Summary

• ID
  rs47891025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:110357709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATACCCT CCCTTAGCAT
  TTTGTCTCAG ATGTTTTATG TAGATATGAA TTCAAAACTG GATAGAACTA TACTCTGAAT
  GCACAGACAC AGCATAAATA TCGCTAAATT CATTCATCAT TCATTCATCA GATTAAAAGC
  ATCTTTACAT CATTATTATG ATCCAGGAGG TCTGCCTGGC ACCAGGAATT CTAGACGGAT
  R
  TGGCTCCTTT TAGTGAAGGA ACCAGGTTAT TAAAACATAT AGTGATGAAT GGGACAGTAG
  AGATCTAGAA AACAAACATC CAACAGAGAT GGAAGGGGGT GGGAGAAGGA TTCTTGCTAA
  ACTGAGAACA GCCGGCTGAG AAGTCATCCA AGAAAAAAAG AGCAAGAGGA AGAAAAACAG
  AAATGGCAAG AAGTGAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61312785	NES16918335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G		G	G
ss323463785	CHEV_10_109958904	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs47891025					SNP	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61312785	NES16918335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:110357709 () rs orientation: forward

Symbol	Name	Function Class
D10Mit150	DNA segment, Chr 10, Massachusetts Institute of Technology 150	1383 bp proximal