rs47891341 SNP Detail

Summary

• ID
  rs47891341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122005437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCTTCT TGTACAGTGC
  CAGCCTCATC CTGTAGACAA AATGGTGAAG GCCAGTGTGA ACGGATTTGG CCATATTGGG
  CGTCTGGTCA CCAGGAATGC CATCTGCTCT CCACATAGCA AAGTGGAGGT TGTTGCCATC
  AACGACCCTT TTCATTGACC TCAACTACAT GGTCTACATG TTCCAGTATG ACTCCACCCA
  Y
  GGTAAATTCA ATGGCACAGT CAAGGCTGAG AAAGGGAAGC CCATCACCAT CTTCCAGGAG
  CGAGACCCCG CTAACATCAA ATGGGGTGAG GCCGGTGCTG AGTATGTCGT GGAGTCTACT
  GGTGTCTTCA CCACCATGGA GAAGGCCAAG GCCCACTTGA AGGGTGGAGC CAAAAGGGTC
  ATCATCTCTG CCCTTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61326516	NES16938812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47891341					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61326516	NES16938812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122005437 () rs orientation: forward

Symbol	Name	Function Class
Gm9081	predicted gene 9081	within coordinates