rs47892413 SNP Detail

Summary

• ID
  rs47892413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGACA TCAGAGCCGC
  TAAAACTGGA GTTACAGACA GTTGTGAGCT CCACATAGGT GGTGGGAAGG GAACCTGTAT
  CTTCTGTATG AGCAACACGT GCTCTTAATT GTAGAACTCT CTCTCCAACC CTCGATTTTT
  GTTTTGTTTC GTTTCATTTT GTATTGTATT GTACTATGTA GGTGCTGGAA ATGCAAACTC
  R
  GGTCTTCATG TTGGCATAGT GAGCACTTAG CCAATGGCGG CATCTTCCCA GCCCACACCT
  AAAATCCCTT TTTTAAAAAA TGTATTCTGA AGCTGGGCAG TGGTGGCACA TGCCTTTGGT
  CTCAGCACTC AGGAGACCAA GGATTTCTGT GAGTGAGTTC TAGGCCAGTC TGGTCTAGTC
  CCATCCTGTG TCTTGCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148206295	ENSMUSSNP5478822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47892413					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436817 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	427 bp downstream
Rr569427	regulatory region 569427	541 bp distal
Rr569428	regulatory region 569428	133 bp proximal