rs47893198 SNP Detail

Summary

• ID
  rs47893198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41721558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAATTCT GGGGATTTTT
  CAGAAGGTAT GTAAATAATA AGGCCCCCAG GGGCAAGGTT GTTGGTGGTT GGTTGTTCAC
  TGTTTGACAA GTAGTCCTGT GCAAAGAAAG AACAGCAGCA AGAAATTAGA TATCCTAATT
  ATGGAGATCA AACTTGCCCC AAGGAACTCA ACACCTCTGA TCAGCAGGAA GTAGTCTAAT
  R
  ACAAGGTCGC CCAATTTCTG ACCCCTGACT TTATTCAATA ATTTCTTTCC TTTCTTCTCT
  ATCCTTTTTT CTCTCTTTTA TAATGTTAGA GGGTTGAAAG GTTAGAGGGA AGGTGGAGAA
  GGGTGGAAGA AAGAAGAACC CATAGAGTAG CAAAAGACAA GTTACAAAGG TCGGTACAGG
  AACTGCCATG AACTGAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61773534	NES17711116	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47893198					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61773534	NES17711116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41721558 () rs orientation: forward

Symbol	Name	Function Class
Gm32184	predicted gene, 32184	within coordinates
Rr478020	regulatory region 478020	608 bp proximal
Tssr4053	transcription start site region 4053	939 bp downstream
Tssr4054	transcription start site region 4054	1244 bp upstream
Tssr4055	transcription start site region 4055	1477 bp upstream
Tssr119410	transcription start site region 119410	1210 bp upstream
Tssr119411	transcription start site region 119411	1214 bp upstream