rs47893628 SNP Detail

Summary

• ID
  rs47893628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGTCCC GGTGAGTCTG
  TCAGGTATCA GTCAGGAAAC TCCAGGATAC CCTGGATACG TCGGCGCTCA GGACACCCCA
  AAACCCTGTG AAGCCCTCGG GCCTCGTGCT CTGTGACCCC TGGAGTCACT TCCGGATCAG
  GCTCGACGGC CCGCTCTTGT CTTCCGTCAG TGGCGACGGT GTGGGAGGAA TTCCCAGGCC
  Y
  GGGGACAGGG AGCCCTAGCT CGGGTCGGGG TCGTGACCTT GGCGATCCCC CCGAGTCCCG
  AGCTCCGCTT GTCTCGCTAC ACCCGACGCC AGGAAGTTCC CCGAGGGCGC CGGAGGCGGG
  CGCCGCACCC ACACTCACTC AAAGACGTGC TCCGAAGTCC AGATCTTCAT GGTGCCAGCT
  GCCTGCCCGG TGTCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343926	ENSMUSSNP5443748	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320627895	CHEV_2_174298194	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47893628					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	396 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	184 bp upstream
Rr572131	regulatory region 572131	1766 bp distal
Rr572132	regulatory region 572132	1377 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	70 bp distal
Rr572135	regulatory region 572135	195 bp proximal
Rr572136	regulatory region 572136	304 bp proximal
Rr572137	regulatory region 572137	378 bp proximal
Rr572138	regulatory region 572138	503 bp proximal
Tssr28035	transcription start site region 28035	185 bp downstream
Tssr28036	transcription start site region 28036	256 bp downstream