rs47893728 SNP Detail

Summary

• ID
  rs47893728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAGCAGG ACCCTTAAGC ACCTACTTCC AGGAAGACCA
  AGTAATGACA CTCTTCAAGG TCAGCCCCTC CCATTCAGAG TCTAAGTTAG CTCTGCGGCT
  K
  CACCCGGGAC TCCGGGGACT GTGGGCGGGG CTCCGCCTTG AACCGGGCGT GGCCAAAAGA
  CGAATTTAAA AACTCGCGGG GGACCTGGCT TTAGATCGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148677488	ENSMUSSNP3851566	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss322134112	CHEV_7_31206657	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47893728					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1456 bp proximal
Hcst	hematopoietic cell signal transducer	1784 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	94 bp upstream
Rr368301	regulatory region 368301	1696 bp downstream
Rr400239	regulatory region 400239	within coordinates
Rr400240	regulatory region 400240	494 bp upstream
Rr644812	regulatory region 644812	1966 bp distal
Rr644813	regulatory region 644813	1294 bp distal
Rr644814	regulatory region 644814	within coordinates
Rr644815	regulatory region 644815	278 bp proximal
Rr644816	regulatory region 644816	1147 bp proximal
Tssr2184	transcription start site region 2184	1706 bp upstream
Tssr65711	transcription start site region 65711	1973 bp downstream
Tssr65712	transcription start site region 65712	1946 bp downstream
Tssr65713	transcription start site region 65713	1689 bp downstream
Tssr65714	transcription start site region 65714	86 bp upstream
Tssr65715	transcription start site region 65715	634 bp upstream
Tssr65716	transcription start site region 65716	751 bp upstream
Tssr65717	transcription start site region 65717	795 bp upstream
Tssr65718	transcription start site region 65718	823 bp upstream
Tssr65719	transcription start site region 65719	1628 bp upstream
Tssr65720	transcription start site region 65720	1667 bp upstream
Tssr65721	transcription start site region 65721	1724 bp upstream
Tssr65722	transcription start site region 65722	1743 bp upstream
Tssr65723	transcription start site region 65723	1774 bp upstream
Tssr65724	transcription start site region 65724	1790 bp upstream
Tssr65725	transcription start site region 65725	1962 bp upstream
Tssr65726	transcription start site region 65726	1969 bp upstream
Tssr65727	transcription start site region 65727	1987 bp upstream
Tssr71741	transcription start site region 71741	1862 bp upstream
Tssr71742	transcription start site region 71742	1766 bp upstream
Tssr71743	transcription start site region 71743	1276 bp upstream
Tssr71744	transcription start site region 71744	1265 bp upstream
Tssr71745	transcription start site region 71745	2 bp upstream