rs47894851 SNP Detail

Summary

• ID
  rs47894851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATACACCCG TGGCTCTTGA GGAGTTTGTC GTGCATAAGG
  CACATCCAAA AAACATTCCT TTGCAAAAAA CAAAGGCTAG GTAGAAGAAT TGGAATGTAC
  Y
  GGTAAAGGTA CTGGCCATGA TTTTACTATG GCCCACAAAG GTATACTTAT CCCGGTCTCA
  ATCATCAGGA GCAGGAGGAA CATCTTGGGG TTCATATTGC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145003708	ENSMUSSNP6997124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss146190315	ENSMUSSNP5056103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss146380237	ENSMUSSNP634441	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss147933077	ENSMUSSNP2570101	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss148823022	ENSMUSSNP6770474	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47894851					SNP	T	?	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates