rs47895568 SNP Detail

Summary

• ID
  rs47895568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATCAAC ATTCACCCTG
  AAAACTCCTC TCCACTCTCC AAAGTTCATA TACAGCCCTT GTCCACCCAA ATAAAGTAAG
  TGAGCACCAG CTATTTCACT GAAGACCATC TAAGAGCCAC TTCATTGGGA GTCATCTAAA
  AGAGCTGTAA GACTAAAATC GCCAGAGAAG GCCTTCCTTG GTGAAGCCCT CCACCCCATG
  Y
  CCACATGTGA GTTCAGCTGG ACTGAGAGCC AGTCCCAACC TGTTCCAGAC TCCACTTCAT
  CCTTCAAGCC TGGTGCCTGG ACACCCTGAG GGAGGAAACA GAGGACAGAG AAGCACTTCT
  GGCACCCAAC GCGGCCCACA GCTGGAGGAA GCTAACATAC ACCTGGGAGG ATGCTGGTAC
  TTGATGGGCT GGGCTATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147608095	ENSMUSSNP2778129	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		T
ss324923457	CHEV_15_36655776	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47895568					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726265 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	221 bp upstream
Cpgi7034	CpG island 7034	1315 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	785 bp downstream
Tssr131078	transcription start site region 131078	744 bp downstream
Tssr131079	transcription start site region 131079	299 bp upstream
Tssr131080	transcription start site region 131080	340 bp upstream
Tssr131081	transcription start site region 131081	371 bp upstream
Tssr131082	transcription start site region 131082	646 bp upstream
Tssr131083	transcription start site region 131083	839 bp upstream
Tssr131084	transcription start site region 131084	885 bp upstream