rs47896280 SNP Detail

Summary

• ID
  rs47896280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125200858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAAGGT ATTTCATAGC
  AGTGAGCACA AGGAAGCTCT CGTGCAGCTG AGGGAGTGTT GTATAACTCT CCCAAAACTC
  CTGGCAGCTG TCTGAAGGGT CAGAACCCTA ATATCTGATG ATGTAACGGT GCAGATGTAG
  CCCAGGGCCT CTGCTTCGTA CCTTGAAACA ACGAGTTGGG AGTTGGAGCA GCTAGGAATG
  Y
  TTTGGAACCA ACAGGGAGAG AGAGAAGAAA GTGCGCTGTA GTCACAGCAT GTTTTTATTT
  TGACAGTGTT GGCATTCATG AGTGGTCACA GCCTCTCCCG CTTCCCTCAC TTTGATCCTT
  TTTCTAAGAG AATTTTTTTA CATCTGACTT TTTTTTCATT TACTCATTTT ACATTCCAAT
  ATCAGTTCCC TCTCTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940109	NES16188523	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47896280					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940109	NES16188523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125200858 () rs orientation: forward

Symbol	Name	Function Class
Rr368188	regulatory region 368188	1407 bp downstream
Tapbpl	TAP binding protein-like	38 bp downstream
Tssr58935	transcription start site region 58935	1992 bp downstream
Vamp1	vesicle-associated membrane protein 1	1589 bp downstream