rs47896447 SNP Detail

Summary

• ID
  rs47896447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTTACTG GGATGTGCTC
  ACGTGCTTGA GACCATCCAA CAGACTAGAC TAATCTATGG TGGGGAAAAG TTAGATCTGA
  TCCCTGCTGT GGGGGCTCAA GAAGTACTGG CTGGGAAGGA TTACAAGGGA CAGGGCCTTT
  CTTGGGTGAT GGTGATGGTC TGAGTCCTGA CAGGAAGGGG AGGGCTGGTT ACATGGGTAT
  K
  TCCCTTTGTC AATGCCTTGC AAGCCACACT TTACCTTCGG TTCTTCTCTG TGGCACTTCA
  CTAGCCTGCA GGATGACGAT AAATGTCAGC CATGATGTCA TGTAGCAGCC ATGAGCATCA
  CACAGACGAC TCAGTCCCCA GGACTGTTTT ATTGGTTCCA GAAAGTTCTC TTGTATGAGA
  CTTTGGTACC AGCTATGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148023859	ENSMUSSNP1247120	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320569681	CHEV_2_154015310	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47896447					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031494 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1244 bp upstream
Rr567773	regulatory region 567773	1777 bp distal
Rr567774	regulatory region 567774	754 bp proximal
Rr567775	regulatory region 567775	1255 bp proximal
Rr567776	regulatory region 567776	1481 bp proximal
Tssr20971	transcription start site region 20971	1175 bp upstream
Tssr20972	transcription start site region 20972	1189 bp upstream
Tssr20973	transcription start site region 20973	1202 bp upstream
Tssr20974	transcription start site region 20974	1232 bp upstream
Tssr20975	transcription start site region 20975	1259 bp upstream
Tssr20976	transcription start site region 20976	1694 bp upstream