rs47896746 SNP Detail

Summary

• ID
  rs47896746
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:147374761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TCAGTGTATG TTTCATGTGC
  C
  TGCTTTCAAT TTGAAATCTA GAATA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144672918	ENSMUSSNP2652853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47896746					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147374761 () rs orientation: forward

Symbol	Name	Function Class
Gm42883	predicted gene 42883	1439 bp upstream
Pan3	PAN3 poly(A) specific ribonuclease subunit	within coordinates
Rr624945	regulatory region 624945	1918 bp distal
Tssr49828	transcription start site region 49828	1381 bp upstream