rs47898587 SNP Detail

Summary

• ID
  rs47898587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37127823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAACTCT GCTTGCAGAG
  AGTGTAGGGT TAGGATTTAG ATTTCTTTCC AGTTGGTCTT TTTTTGCCAT GGCCTGAGTG
  AGTCACTTGG CCAGCTTTAT CTAAGTCCTT AGCCGGTTTT TCAGTGTCTA TTCAAACACG
  GCTTGGCCCC TCGAGGTTCC AGCGTTAGGA GCTGTCCTTG TGCATTATGA GCTGTCCCTG
  Y
  GCCATGGGCT GAGGCACCAC TGGAGAATCC TATTAGGCCT CCATCTCCAG TCAGAACCAC
  TTCGGACTTC GATCCCAGTT CCAGCTTACC CGTCGGGCTA TGAGGGTACA TTAAATTTAA
  CACACTGTAG AATGTTACCT TTTTCCATGT ATGGTTTTAA AAATTCCATT TTGTTAGGCA
  CTTCCGCTGT TCTGCGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61379566	NES16766527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47898587					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379566	NES16766527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37127823 () rs orientation: forward

Symbol	Name	Function Class
Gm67746	predicted gene, 67746	within coordinates
Rr383211	regulatory region 383211	574 bp upstream
Rr676647	regulatory region 676647	1513 bp distal
Tmem218	transmembrane protein 218	within coordinates