rs47898926 SNP Detail

Summary

• ID
  rs47898926
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTTATG AAGCCATTTG
  AGCACGGTGG TTCATGCCTA CAATCCCCAC GCTACAGTCA GACAGTCAGA CTCACTGTTA
  TTCTTGGGGA GCTCAAGGGC AGCCAGTTTC AGACCCTGTT TGGGGGAGGC CAAGTACTTC
  AGGGACCATA CCTAAAACAA GCTTGCTAAA TAGGTCAGTG GTGGCACAAG CCTTTAAGCT
  C
  GGCTCTTAGA GGAGGCAGAG GCAGGGGGAT CTCTGTGTGT TTGAAGTCAG CCTGGTCTAC
  AGAGTGAGTT CCAGGACAGC CAGGGCTACA GAGAAAAAAA AAGTCTGAAG AAAGAATTAA
  GACAACAACA AAAATAGCAT GCTACATAGG TAGCCGTCAT TACCCTTGTA TCCATGACAT
  CCATCATTAC CCAGGTATCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147514278	ENSMUSSNP1098746	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47898926					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1581 bp proximal
Gm75308	predicted gene, 75308			1507 bp upstream
Rr564422	regulatory region 564422			1143 bp proximal
Rr564423	regulatory region 564423			1869 bp proximal
Rr564424	regulatory region 564424			1902 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			715 bp downstream
Tssr26085	transcription start site region 26085			1807 bp downstream
Tssr26086	transcription start site region 26086			1936 bp downstream
Tssr26087	transcription start site region 26087			1967 bp downstream