rs47899118 SNP Detail

Summary

• ID
  rs47899118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128514612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA TATTGCCTTA ATTATATATC
  R
  CTTACTGCCT GGGTGTGTGC CTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60796480	NES16465794	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss145462092	ENSMUSSNP4371793	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss319965130	CHEV_1_130483452	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47899118					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60796480	NES16465794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128514612 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	1324 bp downstream
Rr12058	regulatory region 12058	789 bp proximal
Rr28453	regulatory region 28453	1988 bp proximal
Tssr195	transcription start site region 195	42 bp downstream
Tssr13461	transcription start site region 13461	1543 bp downstream
Tssr13462	transcription start site region 13462	1729 bp downstream
Tssr13463	transcription start site region 13463	1825 bp downstream
Tssr13464	transcription start site region 13464	1882 bp downstream
Tssr13465	transcription start site region 13465	1900 bp downstream
Tssr13466	transcription start site region 13466	1965 bp downstream