rs47899907 SNP Detail

Summary

• ID
  rs47899907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGCCCA TCTGTAGGAT
  GGTAATCTTT CAGGCTAGCC TTGGCTAGCA TAGTGAGACC TGTGACAAGA GAAGAAGGAA
  ACAGGAGAAG GAGAAAGGAA ACAAGAGAGG GACCTGCACC TATCCTGTCC TCTCAGTCAA
  CTCCACCTGC CTGCTCTGTC CGGGGATCCT CTTGGTAAGT CCTTGGCAGG ACATTGCATC
  Y
  ACCCTTCTGA TGCTTGCATT TGCTCATTCT TTCCCCATCT AAGACCTGTC CACAGTAACT
  CGTTCTTCTC TGCACTGTCT CCTGACCTCC AGAAAGCTAC CTTTCCTCTC AGATCTACTC
  TTTTCTTCCT CAGATTTCTC AAGCCTCTCT ACTTCCTCAT AGCTCAGGCT GCCCCTGGAG
  AGCTCCAAAC AGAAGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742427	ENSMUSSNP5440363	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47899907					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393925 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	223 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	472 bp upstream
Ighj2	immunoglobulin heavy joining 2	790 bp upstream
Ighj3	immunoglobulin heavy joining 3	1173 bp upstream
Ighj4	immunoglobulin heavy joining 4	1738 bp upstream
Tssr115504	transcription start site region 115504	65 bp downstream
Tssr118005	transcription start site region 118005	1758 bp upstream
Tssr118006	transcription start site region 118006	1727 bp upstream
Tssr118007	transcription start site region 118007	1681 bp upstream
Tssr118008	transcription start site region 118008	1654 bp upstream
Tssr118009	transcription start site region 118009	1643 bp upstream
Tssr118010	transcription start site region 118010	1505 bp upstream
Tssr118011	transcription start site region 118011	1407 bp upstream
Tssr118012	transcription start site region 118012	1172 bp upstream
Tssr118013	transcription start site region 118013	1157 bp upstream
Tssr118014	transcription start site region 118014	1053 bp upstream
Tssr118015	transcription start site region 118015	957 bp upstream
Tssr118016	transcription start site region 118016	803 bp upstream
Tssr118017	transcription start site region 118017	463 bp upstream
Tssr118018	transcription start site region 118018	71 bp downstream
Tssr118019	transcription start site region 118019	88 bp downstream
Tssr118020	transcription start site region 118020	144 bp downstream
Tssr118021	transcription start site region 118021	284 bp downstream
Tssr118022	transcription start site region 118022	316 bp downstream
Tssr118023	transcription start site region 118023	481 bp downstream