rs47899962 SNP Detail

Summary

• ID
  rs47899962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116590328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAACCTTG GGCATTGTGC
  CTCAGGAGCC ATCCACCTTG TAATTTTGAG GCAGTGTCTC TCTTTAAACC TTGCCAATTT
  GGCCAGGTGG TCTGGGCAGA GAGCCTCATG GATTCTCCCG TCTTTGCCTT TCTAGTTCTG
  GAACTCTGGG ACTATAAGCA AGAGCTACCA TACCATAATT TTTTTTCTTC AATTCCATTT
  W
  TCCATGAGCC ATCTCTTTGG TGCTATAATT GAAAATCTAA TTGTACAATT CTTTGATGGT
  CTCTGCATGG AAATCCTACA GATAAACCCT TACTCTTTCT TGTTTTCTGA CACACACACA
  CATGTGTATA CATATACATA TATGTATATT TGAGCAAAGT ATATCTTGCA GAAACATGTG
  TTGAATAAAT AAATACATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145742564	ENSMUSSNP1822312	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47899962					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116590328 () rs orientation: forward

Symbol	Name	Function Class
Rr381374	regulatory region 381374	within coordinates