rs47900304 SNP Detail

Summary

• ID
  rs47900304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCACTTTA TTGTGTGATC AAAATTTTTT CTTAGAGATT
  AAAAAAAAAC AAACCTGAAA TGGAGTCTAC AAAGAAAAGG ATGTTTTACA GAGAGAAAAC
  Y
  TTCCAGATTA TCTGACTCTA GTCTGTCATT TATCCTGATT TTAGTTTTTC TTGACATTGA
  GCAATTTTAG TCTCTGAAGT TGCAGCTAAT TGATAAGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136309775	ENSMUSSNP4283148	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47900304					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1283 bp proximal
Gm10177	predicted gene 10177	708 bp downstream
Gm48081	predicted gene, 48081	1609 bp upstream
Gm65989	predicted gene, 65989	524 bp downstream
Rr676656	regulatory region 676656	785 bp proximal
Rr676657	regulatory region 676657	1515 bp proximal
Rr676658	regulatory region 676658	1620 bp proximal
Rr676659	regulatory region 676659	1839 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	1468 bp downstream
Tssr88822	transcription start site region 88822	1492 bp downstream
Tssr88823	transcription start site region 88823	1514 bp downstream
Tssr88824	transcription start site region 88824	1540 bp downstream
Tssr88825	transcription start site region 88825	1555 bp downstream
Tssr88826	transcription start site region 88826	1641 bp downstream
Tssr88827	transcription start site region 88827	1734 bp downstream
Tssr88828	transcription start site region 88828	1757 bp downstream
Tssr88829	transcription start site region 88829	1780 bp downstream
Tssr88830	transcription start site region 88830	1796 bp downstream
Tssr88831	transcription start site region 88831	1841 bp downstream