rs47900545 SNP Detail

Summary

• ID
  rs47900545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18478078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAATTC ATTCATAAAT
  TGTATATCTA TTTTAAAATT AATGAGTAGT TTTAAAATGG AATTGTCATG AAGACTATAA
  TTTCAATGCA GAAAATACAT TCTCAGTAGG AGGGTAAATT TGGCATGTTC TTAGAACTCA
  AATAAAGTAC TCAAAGAATG TAAAGTAAGA AAAAAAAATC ACCTGGAAAT TCAGTATACC
  R
  CTCTCATGCC AATCATGGTT TTAGAGTTAA AGAAAGAAAA TAACATGATC AAAGTCCATA
  TAATTAAACA GTTAATATTA GTGAAAAGGA ACATACCAAA GTCTGTCCAA CTGAGGCTTT
  AGGACTTAAA AAAAAATAGC CTCTAGGGAA TGACACTGTG AAAACAGCAT GCCTGGTTTG
  GGGATGAGGA GGCAATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60375949	NES15879754	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47900545					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60375949	NES15879754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18478078 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65503	predicted gene, 65503	23 bp downstream
Rr573897	regulatory region 573897	1498 bp distal