rs47900764 SNP Detail

Summary

• ID
  rs47900764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60058800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGACAGT GAAAGAAATG CCTGCCAGTG CTAGGAGCCG
  TGGACCTGAA ACTGAAGTAT GGTTTCCTCA GAAGGATTCA TGAAGTTTAA TCATATGTTT
  W
  AAAAAAATGT AGAAGGATTT AGAGAAATAG TAGAAAACGA TGAAATTGAG GAAAAAACAA
  GTAGACTTAG AGAGATACCA AAAAAAAAAA AATGTGTATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560000	NES15632514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47900764					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560000	NES15632514	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60058800 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	417 bp proximal
Tssr4605	transcription start site region 4605	253 bp downstream
Tssr134460	transcription start site region 134460	54 bp upstream
Tssr134461	transcription start site region 134461	76 bp downstream
Tssr134462	transcription start site region 134462	163 bp downstream
Tssr134463	transcription start site region 134463	223 bp downstream
Tssr134464	transcription start site region 134464	317 bp downstream
Tssr134465	transcription start site region 134465	371 bp downstream
Tssr134466	transcription start site region 134466	384 bp downstream
Tssr134467	transcription start site region 134467	420 bp downstream
Tssr134468	transcription start site region 134468	447 bp downstream
Tssr134469	transcription start site region 134469	478 bp downstream