rs47901046 SNP Detail

Summary

• ID
  rs47901046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119230081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG CATATGGAAA CATATGACTG
  K
  ATGTTGGATG CACATAGATA CAGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137047109	ENSMUSSNP3219149	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss323219420	CHEV_9_119310133	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47901046					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119230081 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	1103 bp upstream
Cpgi22474	CpG island 22474	587 bp proximal
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	202 bp proximal
Rr688481	regulatory region 688481	443 bp proximal
Rr688482	regulatory region 688482	948 bp proximal
Rr688483	regulatory region 688483	1440 bp proximal
Rr688484	regulatory region 688484	1505 bp proximal
Rr688485	regulatory region 688485	1665 bp proximal
Tssr87682	transcription start site region 87682	1066 bp upstream
Tssr87683	transcription start site region 87683	1141 bp upstream
Tssr87684	transcription start site region 87684	1211 bp upstream