rs47901182 SNP Detail

Summary

• ID
  rs47901182
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109692079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATTTCT CCTGGTTGCT
  ATGAGCCACG TTTTAGGCTG TTGTTAGTCA TGTTCCTCAC GGGAGCACCC AGCCCGTCCA
  GGAAGCCCAT CGCTGTGTTC TCCCCTAAGC CTGAATCCCA CCCTCGGGGA GCCAAAGGAC
  TCTTTCTAGT GTGTCCTCTC TAAAACCTTG GTTTTCTTCT TTTCGAAGCC ACTGGAAATT
  M
  GATTGAAATC TGGAAAGTGG CATCGTGGGA ACAAGGCTAA GCAGACAGAT GTCTCTGGCA
  GGAAGTGGTC AACTCTTTGA ATGCTTCTAA TGATGGTTAC TGGTTGAATT AAGATCAGGA
  CTGCTAATTG CTTGCCGAAT TCAGCAAATG AAGGCCCCTG GAGAACCTGA CAAAGGCTGT
  GTCCTCCAAG CTGAGAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61450573	NES16836845	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47901182					SNP	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61450573	NES16836845	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109692079 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	within coordinates
Gm68591	predicted gene, 68591	446 bp upstream
Rr401695	regulatory region 401695	274 bp downstream
Rr687008	regulatory region 687008	457 bp distal
Rr687009	regulatory region 687009	within coordinates
Rr687010	regulatory region 687010	389 bp distal
Rr687011	regulatory region 687011	1079 bp proximal
Tssr87256	transcription start site region 87256	1401 bp downstream
Tssr87257	transcription start site region 87257	1371 bp downstream
Tssr87258	transcription start site region 87258	1355 bp downstream