rs47902143 SNP Detail

Summary

• ID
  rs47902143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88864505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAATGGT CTCATCGCTG
  CCCCTCAAAA TATCCAGTGA GAGGTTTGAG CTCGGGAGAA ACAGGAGAAG CTCCATCTGT
  AGCTTCAGGG GAGCAAACAG ACCCTGGATG CTCCTCAGGG TGGAAAAGTT CATCTTGTCC
  TGGTTGAGCT GCAAATTTTT TCTGATAATT CAAGAGGGTG ACTGGGCAAA AGTTCATTTT
  Y
  CACACAAGAA AACCCTTTCC AGAGAAGATC GTGACTCTTG ATAGGCCCGT TGGCTGAGAG
  CTCCGCAACT GGAATACTGT CCTTCAGCTC CGACCCAAGG CCTCTGGCGT TCATCTTGGA
  AACAGCTCTG TGAGATCCTC CGAACCTGCT TGAGTCGGCT GACCAAACCA CTCACTTCTG
  TTTCCGGGGC CAAGACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148329568	ENSMUSSNP2284256	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47902143					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88864505 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	within coordinates
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	1313 bp upstream
Tssr135828	transcription start site region 135828	1738 bp upstream
Tssr135829	transcription start site region 135829	1705 bp upstream
Tssr135830	transcription start site region 135830	1493 bp upstream
Tssr135831	transcription start site region 135831	1310 bp upstream
Tssr135832	transcription start site region 135832	122 bp downstream