rs47903267 SNP Detail

Summary

• ID
  rs47903267
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101832682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTGGC TCACAGTTTC
  TCTCAGAGCC CATCATTGCT GGGAAGTCGA GGCACCAGGA ACTTAAGCAG CTAGTAACAT
  GGCATCCACA GACAAGAACA GAGGGCAGTG ATGTGATGGA TGCGCTCACC AGTGATCAGC
  TAGTTCCCTC ACTCATTCGT TCAGACTAGG GCCCAACCTA TGAAATGGCC TCACACATAT
  T
  GGGGGGGGGG GCTTTCTAAC AACCCAGTTT TTAAACAAAT TCCCTCAGAA GCATGTCCAG
  GGCCAACCTA CTCTAGACTG CTCCTCACTG AGTGAATGGG AACTTCCTTC CCAGCCGAGG
  CTAGGTTTTG ATCGTTAAAA CGAACCATCC CCTGAATATA ATACAGAGTA TAATGGATGA
  CCAGGAGGTC CCCTTGTCTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss135551464	ENSMUSSNP6842631	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47903267					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101832682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	555 bp distal
Rr76960	regulatory region 76960	281 bp distal
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	913 bp upstream
Tssr34811	transcription start site region 34811	1151 bp upstream
Tssr34812	transcription start site region 34812	1067 bp upstream
Tssr34813	transcription start site region 34813	958 bp upstream
Tssr34814	transcription start site region 34814	912 bp upstream
Tssr34815	transcription start site region 34815	874 bp upstream
Tssr34816	transcription start site region 34816	846 bp upstream
Tssr34817	transcription start site region 34817	821 bp upstream
Tssr34818	transcription start site region 34818	726 bp upstream