rs47904591 SNP Detail

Summary

• ID
  rs47904591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGGCCTTCAG CCCTTGCCCT CTCAAACTAA CACAGCCAGT
  TCAGACTAGT GCAACACACT GGGCACTTCC AGACACTTCA TTTTACCTCA CCAAGTCTTA
  R
  GGGCCCGCCA TGCATCAGAA GAGATTAGCC TCAACAACTG GGAGCATGTA AAGTGGATGG
  GCTGAAGAAA AGCAAGGGGT GTGTGTGTGT GTGGCAGGGA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136292543	ENSMUSSNP2237451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47904591					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021129 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	1871 bp proximal
Rr383192	regulatory region 383192	1511 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates