rs47906393 SNP Detail

Summary

• ID
  rs47906393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64831983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATACCA TGTATCATCA
  CTGTGTCCAT AAAGTAATTC TGAGAGCTGA CATCTAGGGA TATCTAAGAA GTTATTGACC
  ATCTCAAGCT GAGAAAACCA TAAAATTCAG TCCAAGTAAG ATATGCTTCT ACTGTGCACC
  TGATTGAAGT CTTGCCTCTG TGACTGGAGC ATCCAAAAGA TCCTGGCTTT GTTGTACAAG
  Y
  GAGCCTTTAA CTTTTTATTC TATGTAAATA TGTTATTGGA GAAAACAAAT ATGAACTTTT
  ATCTAAAAAA ATGAAACTAG ATCTAAATAT TTACAGTGTC TGGGTGTCAA ACCTTTTGAC
  TTTGAGATAT GACAATGTGA TCTAGAAATA TGTTTGTCTG CATTCATGAT TCTACTAGGA
  CACATGCAGC TCACAGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61635096	NES17583732	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47906393					SNP	C	C	C	T	C	T	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61635096	NES17583732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64831983 () rs orientation: forward

Symbol	Name	Function Class
Dnajb6-ps	DnaJ heat shock protein family (Hsp40) member B6, pseudogene	1102 bp upstream
Gm59451	predicted gene, 59451	956 bp downstream