rs47908911 SNP Detail

Summary

• ID
  rs47908911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110243787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC ACTTTCACAG GCTGTTCACA
  K
  GCAGCACACT CCAGATCCAG CTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138688732	ENSMUSSNP5030021	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47908911					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110243787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	within coordinates
Dio3	deiodinase, iodothyronine type III	1877 bp upstream
Dio3os	deiodinase, iodothyronine type III, opposite strand	within coordinates
Mir1247	microRNA 1247	695 bp downstream
Rr472865	regulatory region 472865	1114 bp distal
Rr472866	regulatory region 472866	within coordinates
Rr472867	regulatory region 472867	726 bp proximal
Rr472868	regulatory region 472868	831 bp proximal
Tssr115195	transcription start site region 115195	1875 bp upstream
Tssr117772	transcription start site region 117772	1579 bp downstream
Tssr117773	transcription start site region 117773	1605 bp downstream