rs47914349 SNP Detail

Summary

• ID
  rs47914349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115470495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGGAAT ATGCTCTGCG
  TAAACTGGAT GACACCAAAT TCCGCTCTCA CGAGGTGGGT TCCTGCCTTC CATTAAGTCT
  AATTGACCAG CAATAATAGC GGGTCGTACT TTTTTCATTT GATGATGTCA CTCTACCTTA
  AAGCCTGTCT AGAGTGAACA GAGCTACGGG GGTTGCTCTG CTTATAGCCT CCGTTTGAAA
  Y
  GGAGAGGACG GGTACCCACC TCCGTGTGAC AGTGAACGTT GAGGGAGGTG ACAATGCCAG
  GCACACAGTG AGTGCCAGGG CTGGGCTTTG CTCGTGCCTC TGGGTCTTCA CTCTTCCCTT
  CTGTTTGTTT GGATTTCAGG GTGAGACTTC CTACATCCGA GTGTATCCTG AGAGAAGCAC
  CAGCTATGGC TACTCACGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60829336	NES16021080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47914349					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829336	NES16021080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115470495 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	806 bp downstream
Rr618222	regulatory region 618222	1096 bp distal
Rr618223	regulatory region 618223	1057 bp proximal
Srsf9	serine and arginine-rich splicing factor 9	within coordinates
Tssr48220	transcription start site region 48220	285 bp upstream
Tssr48221	transcription start site region 48221	422 bp upstream
Tssr52783	transcription start site region 52783	1593 bp downstream
Tssr52784	transcription start site region 52784	1632 bp downstream
Tssr52785	transcription start site region 52785	1662 bp downstream
Tssr52786	transcription start site region 52786	1788 bp downstream
Tssr52787	transcription start site region 52787	1833 bp downstream