rs47914545 SNP Detail

Summary

• ID
  rs47914545
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTACTGTG TATTTGTCTG
  CATGTGGGCA GAGGCAAAGA TGCCCTCATA TTGTGGTCCC CTTTGTCTAT ATTTCCCTTC
  AACGCATCTC TAACTGAAGA ATAAGTTCTT GAGAAAGATG GTTGATGAAT CCATAACTCA
  GAACTCATCC AGAAAATTTT CAGTAGAACA CCTTGAGATG TTTCCTGGGG GGGGGGGGGG
  A
  ATCAGTAAAA TATAAGCAAT TCCACTATAT CTAGGCTCCC AAAATTCACC AGAAAGAGCA
  ACAAAATCAC ACAGCCCACG CTTGAGTCCC TGCCATAATG ATTCAGAATT GAAGATGGTC
  AAAATCAGTT TTGTACTAGG TCAGACTTTT TCTCTGTTTA TAAGTAATGC TTGTTCTGGT
  GTAGTACTTA AGTGTATGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138915064	ENSMUSSNP7186227	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47914545					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	838 bp proximal
Rr474318	regulatory region 474318	442 bp proximal
Tmem196	transmembrane protein 196	794 bp upstream
Tssr115576	transcription start site region 115576	1076 bp upstream