rs47915548 SNP Detail

Summary

• ID
  rs47915548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106483752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCGTG GCAGGCAGAG
  GCAGGAGGGC CAGAAGTTCA AGGTCATCTT TAGCTACACA GCGAGTTTGA AGCCAAATCT
  CAATAAATAA ATTGAATAAT TAAAGGATTA GACCCAGACC AATAATTTTA TAGGAAAAGT
  GAGACAACAC ATAATAAGAG TACATTCCTT ACAACAGAAT TTTTATCTAT AAAATATAGA
  Y
  TCTACCAAAA GAACTGCCTA CAAAAATCTC CACTTCTGGG CTCCAAAACA TGTTTTCAAT
  TCTAGTCCTA AAGAGTTAAT TTTCTCGATT TCTGTAAAAT GGGTGTCCTG CAGCTTTTGT
  GTTCTCTGGT GTAGTTTTTC AGGAGGAAGT GAGTTTCCTA TCACAAACAA ATCTAGCTTC
  CCCTACTCAA AGACAATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	NOD/ShiLtJ	WSB/EiJ
ss60659113	NES16259893	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	NOD/ShiLtJ	WSB/EiJ
rs47915548					SNP	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60659113	NES16259893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106483752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20952	CpG island 20952	1002 bp proximal
Gfod2	glucose-fructose oxidoreductase domain containing 2	within coordinates
Rr185898	regulatory region 185898	48 bp proximal
Rr401096	regulatory region 401096	1409 bp upstream
Tssr82689	transcription start site region 82689	1450 bp downstream